Stem-loop sequence hsa-mir-202

Accession

MI0003130 (change log)

Symbol

HGNC:MIR202

Description

Homo sapiens miR-202 stem-loop

Gene family

MIPF0000121; mir-202

Literature search

64 open access papers mention hsa-mir-202
(277 sentences)

Stem-loop

      cuca   cc     -       u           -a           g   au 
5' cgc    gag  gcccg ccguucc uuuuccuaugc  uauacuucuuu agg  c
   |||    |||  ||||| ||||||| |||||||||||  ||||||||||| |||   
3' gcg    cuc  ugggc ggcgggg aaaaggguacg  auauggagaaa ucc  u
      accc   -c     u       c           gg           -   gg 

Deep sequencing

35585 reads, 191 reads per million, 128 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr10: 133247511-133247620 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR202
• HGNC:MIR202
• RNAcentral:URS000075BC7D_9606
• miRBase Tracker:MI0003130

Mature sequence hsa-miR-202-5p

• Accession: MIMAT0002810
• Previous IDs: hsa-miR-202*
• Sequence: 28 - uuccuaugcauauacuucuuug - 49
• Deep sequencing: 31937 reads, 125 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Database links:
  • RNAcentral:URS00003D8730_9606
• Predicted targets:
  • TargetMiner:hsa-miR-202-5p
  • TargetScanVert:hsa-miR-202-5p
  • miRDB:hsa-miR-202-5p
  • microrna.org:hsa-miR-202-5p

Mature sequence hsa-miR-202-3p

• Accession: MIMAT0002811
• Previous IDs: hsa-miR-202
• Sequence: 64 - agagguauagggcaugggaa - 83
• Deep sequencing: 3608 reads, 49 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00003E24B2_9606
• Predicted targets:
  • TargetMiner:hsa-miR-202-3p
  • TargetScanVert:hsa-miR-202-3p
  • miRDB:hsa-miR-202-3p
  • microrna.org:hsa-miR-202-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).