Stem-loop sequence dre-let-7i

Accession

MI0001876 (change log)

Description

Danio rerio let-7i stem-loop

Gene family

MIPF0000002; let-7

Literature search

39 open access papers mention dre-let-7i
(203 sentences)

Stem-loop

   gu        u    u            u    g  ggga      au 
5'   guacuggc gagg aguaguuugugc guug uu    ugugac  u
     |||||||| |||| |||||||||||| |||| ||    ||||||  g
3'   cgugaccg uucc ucaucgaacgcg cagu ag    guauug  c
   gu        -    c            u    -  --ag      cc 

Deep sequencing

4402 reads, 227 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr25: 1629655-1629749 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mirlet7i
• EntrezGene:mirlet7i
• RNAcentral:URS000075E187_7955
• miRBase Tracker:MI0001876

Mature sequence dre-let-7i

• Accession: MIMAT0001767
• Sequence: 11 - ugagguaguaguuugugcuguu - 32
• Deep sequencing: 4398 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00004023EA_7955
• Predicted targets:
  • TargetScanFish:dre-let-7i

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).