Stem-loop sequence dre-let-7g-1

Accession

MI0001873 (change log)

Description

Danio rerio let-7g-1 stem-loop

Gene family

MIPF0000002; let-7

Literature search

39 open access papers mention dre-let-7g-1
(206 sentences)

Stem-loop

   --  g        aau   gu     u          ----- g     ac 
5'   gg ggcugugg   gag  aguag uuguauaguu     u ggauc  a
     || ||||||||   |||  ||||| ||||||||||     | |||||   
3'   uc ucgacacu   uuc  ucauc gacauaucaa     g ucuag  c
   cc  g        -cu   ug     c          uagag g     ac 

Deep sequencing

253533 reads, 1.74e+04 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 18382456-18382551 [-]
• Overlapping transcripts:

  sense

  ENSDART00000065881 ; fam120c-201; 3'UTR (exon 17)

Database links

• EntrezGene:mirlet7g-1
• EntrezGene:mirlet7g-1
• RNAcentral:URS000075B5E6_7955
• miRBase Tracker:MI0001873

Mature sequence dre-let-7g

• Accession: MIMAT0001765
• Sequence: 14 - ugagguaguaguuuguauaguu - 35
• Deep sequencing: 507024 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000396EA1_7955
• Predicted targets:
  • TargetScanFish:dre-let-7g

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).