Stem-loop sequence dre-let-7f

Accession

MI0001872 (change log)

Description

Danio rerio let-7f stem-loop

Gene family

MIPF0000002; let-7

Literature search

39 open access papers mention dre-let-7f
(198 sentences)

Stem-loop

   -ug   ---a     g g   u ug                      ---------       u 
5'    gua    ugcuu u cag g  agguaguagauuguauaguugu         aggguag g
      |||    ||||| | ||| |  ||||||||||||||||||||||         ||||||| a
3'    cau    acggg a guc c  uccguuaucuaacauaucaaua         uccuauu u
   aca   aaag     g -   - cu                      gaagaugug       u 

Deep sequencing

281563 reads, 1.93e+04 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr11: 27503017-27503132 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-let-7f

• dre-let-7a-1: chr11: 27503232-27503320 [-]
• dre-let-7f: chr11: 27503017-27503132 [-]

Database links

• EntrezGene:mirlet7f
• EntrezGene:mirlet7f
• RNAcentral:URS000075E3F3_7955
• miRBase Tracker:MI0001872

Mature sequence dre-let-7f

• Accession: MIMAT0001764
• Sequence: 20 - ugagguaguagauuguauaguu - 41
• Deep sequencing: 280881 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00003B7674_7955
• Predicted targets:
  • TargetScanFish:dre-let-7f

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).