Stem-loop sequence dre-let-7b

Accession

MI0001865 (change log)

Previous IDs

dre-let-7b-2

Description

Danio rerio let-7b stem-loop

Gene family

MIPF0000002; let-7

Literature search

41 open access papers mention dre-let-7b
(217 sentences)

Stem-loop

   ucgga     u                     ---  -----a    ugu 
5'      caggg gagguaguagguugugugguu   uc      gggu   g
        ||||| |||||||||||||||||||||   ||      ||||   u
3'      guccc uuccgucauccaacauaucaa   ag      cccg   u
   gggaa     -                     uug  gacuac    uuu 

Deep sequencing

251651 reads, 1.76e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr4: 18653148-18653241 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-let-7b

• dre-let-7a-3: chr4: 18654155-18654261 [-]
• dre-let-7b: chr4: 18653148-18653241 [-]

Database links

• EntrezGene:mirlet7b
• EntrezGene:mirlet7b
• RNAcentral:URS000075D1E7_7955
• miRBase Tracker:MI0001865

Mature sequence dre-let-7b

• Accession: MIMAT0001760
• Sequence: 11 - ugagguaguagguugugugguu - 32
• Deep sequencing: 250243 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000324096_7955
• Predicted targets:
  • TargetScanFish:dre-let-7b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).