Stem-loop sequence dre-let-7a-1

Accession

MI0001857 (change log)

Description

Danio rerio let-7a-1 stem-loop

Gene family

MIPF0000002; let-7

Literature search

43 open access papers mention dre-let-7a-1
(322 sentences)

Stem-loop

      gg     u   gu                uuagg   aca   a 
5' gac  uggga gag  aguagguuguauaguu     guc   ccc c
   |||  ||||| |||  ||||||||||||||||     |||   ||| a
3' cug  acucu uuc  ucauccaacauaucaa     uag   ggg c
      aa     -   ug                -----   --a   u 

Deep sequencing

310369 reads, 2.11e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr11: 27503232-27503320 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-let-7a-1

• dre-let-7a-1: chr11: 27503232-27503320 [-]
• dre-let-7f: chr11: 27503017-27503132 [-]

Database links

• EntrezGene:mirlet7a-1
• EntrezGene:mirlet7a-1
• RNAcentral:URS000075A0C5_7955
• miRBase Tracker:MI0001857

Mature sequence dre-let-7a

• Accession: MIMAT0001759
• Sequence: 11 - ugagguaguagguuguauaguu - 32
• Deep sequencing: 1860970 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000416056_7955
• Predicted targets:
  • TargetScanFish:dre-let-7a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).