Stem-loop sequence rno-mir-291a

AccessionMI0000965 (change log)
Previous IDsrno-mir-291
DescriptionRattus norvegicus miR-291a stem-loop
Gene family MIPF0000068; mir-290
Literature search

9 open access papers mention rno-mir-291a
(30 sentences)

Stem-loop 
     g       a  -  u            c  c   ug   c 
5' cc guguagu gc ca caaaguggaggc cu ucu  ggc c
   || ||||||| || || |||||||||||| || |||  |||  
3' gg uacguca cg gu guuucaccuucg ga aga  ucg g
     g       c  u  -            u  a   --   a
Get sequence
Deep sequencing
388 reads, 0 reads per million, 71 experiments
Confidence Annotation confidence: high
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Comments

This sequence is the predicted rat homologue of a confirmed miRNA from mouse [1]. Its expression has not been experimentally verified in rat.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr1: 64538407-64538488 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-291a
rno-mir-290chr1: 64538705-64538785 [-]
rno-mir-291achr1: 64538407-64538488 [-]
rno-mir-292chr1: 64538119-64538200 [-]
rno-mir-291bchr1: 64537831-64537938 [-]
rno-mir-293chr1: 64537107-64537178 [-]
rno-mir-294chr1: 64536746-64536816 [-]
rno-mir-295-1chr1: 64536623-64536703 [-]
Database links

Mature sequence rno-miR-291a-5p

Accession MIMAT0000894
Previous IDsrno-miR-291-5p
Sequence

14 -  

caucaaaguggaggcccucucu

 - 35

Get sequence
Deep sequencing50 reads, 19 experiments
Evidence by similarity; MI0000389
Predicted targets

Mature sequence rno-miR-291a-3p

Accession MIMAT0000895
Previous IDsrno-miR-291-3p
Sequence

50 -  

aaagugcuuccacuuugugugcc

 - 72

Get sequence
Deep sequencing338 reads, 67 experiments
Evidence by similarity; MI0000389
Predicted targets

References

1
PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).