Stem-loop sequence rno-mir-290

AccessionMI0000964 (change log)
DescriptionRattus norvegicus miR-290 stem-loop
Gene family MIPF0000068; mir-290
Literature search

4 open access papers mention rno-mir-290
(7 sentences)

Stem-loop 
   -   u  u  -      c     a   g          uuu 
5'  uca cu gc gguucu aaacu ugg ggcacuuuuu   u
    ||| || || |||||| ||||| ||| ||||||||||    
3'  agu gg cg ccggga uuugg acc ccgugaaaaa   c
   g   u  c  u      u     -   g          uuu
Get sequence
Deep sequencing
14 reads, 0 reads per million, 11 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr1: 64538705-64538785 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-290
rno-mir-290chr1: 64538705-64538785 [-]
rno-mir-291achr1: 64538407-64538488 [-]
rno-mir-292chr1: 64538119-64538200 [-]
rno-mir-291bchr1: 64537831-64537938 [-]
rno-mir-293chr1: 64537107-64537178 [-]
rno-mir-294chr1: 64536746-64536816 [-]
rno-mir-295-1chr1: 64536623-64536703 [-]
Database links

Mature sequence rno-miR-290

Accession MIMAT0000893
Sequence

13 -  

ucucaaacuaugggggca

 - 30

Get sequence
Deep sequencing1 reads, 1 experiments
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).