Stem-loop sequence rno-mir-134

Accession

MI0000907 (change log)

Description

Rattus norvegicus miR-134 stem-loop

Gene family

MIPF0000112; mir-134

Literature search

33 open access papers mention rno-mir-134
(110 sentences)

Stem-loop

   c     gu        u  -a   g    gcgu  a 
5'  agggu  gugacugg ug  cca aggg    gc c
    |||||  |||||||| ||  ||| ||||    || u
3'  uccca  cacugauc ac  ggu uccc    ug u
   c     ac        c  cg   g    -acu  u 

Deep sequencing

77787 reads, 22.8 reads per million, 425 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133884547-133884619 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-134

• rno-mir-381: chr6: 133876615-133876675 [+]
• rno-mir-487b: chr6: 133877124-133877205 [+]
• rno-mir-3576: chr6: 133877812-133877926 [-]
• rno-mir-539: chr6: 133877832-133877907 [+]
• rno-mir-6331: chr6: 133878578-133878700 [+]
• rno-mir-544: chr6: 133879169-133879246 [+]
• rno-mir-3592: chr6: 133884161-133884276 [-]
• rno-mir-382: chr6: 133884178-133884257 [+]
• rno-mir-134: chr6: 133884547-133884619 [+]
• rno-mir-668: chr6: 133885141-133885208 [+]
• rno-mir-485: chr6: 133885299-133885377 [+]
• rno-mir-154: chr6: 133888586-133888669 [+]
• rno-mir-496: chr6: 133889283-133889361 [+]
• rno-mir-377: chr6: 133890690-133890761 [+]
• rno-mir-541: chr6: 133892655-133892744 [+]
• rno-mir-409b: chr6: 133893418-133893497 [-]
• rno-mir-409a: chr6: 133893419-133893495 [+]
• rno-mir-412: chr6: 133893571-133893640 [+]
• rno-mir-3578: chr6: 133893672-133893788 [-]
• rno-mir-369: chr6: 133893693-133893771 [+]
• rno-mir-410: chr6: 133893997-133894072 [+]

Database links

• EntrezGene:Mir134
• miRBase Tracker:MI0000907

Mature sequence rno-miR-134-5p

• Accession: MIMAT0000840
• Previous IDs: rno-miR-134
• Sequence: 8 - ugugacugguugaccagagggg - 29
• Deep sequencing: 72102 reads, 421 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-134-5p
  • miRDB:rno-miR-134-5p
  • microrna.org:rno-miR-134-5p

Mature sequence rno-miR-134-3p

• Accession: MIMAT0017125
• Previous IDs: rno-miR-134*
• Sequence: 47 - cugugggccaccuagucaccaa - 68
• Deep sequencing: 5616 reads, 248 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-134-3p
  • miRDB:rno-miR-134-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).