Stem-loop sequence rno-mir-29a

AccessionMI0000863 (change log)
DescriptionRattus norvegicus miR-29a stem-loop
Gene family MIPF0000009; mir-29
Literature search

112 open access papers mention rno-mir-29a
(923 sentences)

   a    uuagagg            uuu       c    ucaa 
5'  cccc       augacugauuuc   ugguguu agag    u
    ||||       ||||||||||||   ||||||| ||||    a
3'  gggg       uauuggcuaaag   accacga ucuu    g
   a    uuaguaa            ucu       -    uuaa 
Get sequence
Deep sequencing
3521481 reads, 2.36e+03 reads per million, 502 experiments
Confidence Annotation confidence: high
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The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [4]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr4: 58343931-58344018 [-]
ENSRNOT00000053581 ; Mir3556a-201; exon 1
Clustered miRNAs
< 10kb from rno-mir-29a
rno-mir-29b-1chr4: 58344310-58344390 [-]
rno-mir-3587chr4: 58344283-58344345 [+]
rno-mir-29achr4: 58343931-58344018 [-]
rno-mir-3556achr4: 58343919-58344036 [+]
Database links

Mature sequence rno-miR-29a-5p

Accession MIMAT0004718
Previous IDsrno-miR-29a*

16 - 


 - 37

Get sequence
Deep sequencing8040 reads, 445 experiments
Evidence experimental; cloned [4], SOLiD [5]
Predicted targets

Mature sequence rno-miR-29a-3p

Accession MIMAT0000802
Previous IDsrno-miR-29a

54 - 


 - 75

Get sequence
Deep sequencing3513434 reads, 502 experiments
Evidence experimental; cloned [1-4], SOLiD [5]
Predicted targets


PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).