Stem-loop sequence rno-mir-19a

Accession

MI0000849 (change log)

Description

Rattus norvegicus miR-19a stem-loop

Gene family

MIPF0000011; mir-19

Literature search

38 open access papers mention rno-mir-19a
(263 sentences)

Stem-loop

       c  u     c           --      ---    ag 
5' gcag cc cuguu guuuugcauag  uugcac   uaca  a
   |||| || ||||| |||||||||||  ||||||   ||||  a
3' cguc gg gguag caaaacguauc  aacgug   augu  g
       c  u     u           ua      uug    aa 

Deep sequencing

153116 reads, 151 reads per million, 498 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr15: 100180162-100180243 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-19a

• rno-mir-17-1: chr15: 100179879-100179962 [+]
• rno-mir-18a: chr15: 100180015-100180110 [+]
• rno-mir-19a: chr15: 100180162-100180243 [+]
• rno-mir-20a: chr15: 100180334-100180418 [+]
• rno-mir-19b-1: chr15: 100180464-100180550 [+]
• rno-mir-92a-1: chr15: 100180586-100180663 [+]

Database links

• EntrezGene:Mir19a
• miRBase Tracker:MI0000849

Mature sequence rno-miR-19a-5p

• Accession: MIMAT0017098
• Previous IDs: rno-miR-19a*
• Sequence: 13 - ucguuuugcauaguugcacu - 32
• Deep sequencing: 1331 reads, 304 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-19a-5p
  • miRDB:rno-miR-19a-5p

Mature sequence rno-miR-19a-3p

• Accession: MIMAT0000789
• Previous IDs: rno-miR-19a
• Sequence: 49 - ugugcaaaucuaugcaaaacuga - 71
• Deep sequencing: 151782 reads, 498 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-19a-3p
  • miRDB:rno-miR-19a-3p
  • microrna.org:rno-miR-19a-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).