Stem-loop sequence mmu-mir-362

Accession

MI0000763 (change log)

Symbol

MGI:Mir362

Description

Mus musculus miR-362 stem-loop

Gene family

MIPF0000209; mir-362

Literature search

8 open access papers mention mmu-mir-362
(9 sentences)

Stem-loop

   cuc           acc        aa   u  u 
5'    gaauccuugga   uaggugug  ugc gc u
      |||||||||||   ||||||||  ||| ||  
3'    cuuaggaacuu   guccacac  acg ug c
   aaa           ---        -a   -  a 

Deep sequencing

44986 reads, 58.3 reads per million, 103 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 7241982-7242046 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000039775 ; Clcn5-003; intron 2

  OTTMUST00000039776 ; Clcn5-004; intron 3

  OTTMUST00000039777 ; Clcn5-005; intron 3

  ENSMUST00000128319 ; Clcn5-003; intron 2

  ENSMUST00000115746 ; Clcn5-004; intron 3

  ENSMUST00000132126 ; Clcn5-005; intron 3

Clustered miRNAs

< 10kb from mmu-mir-362

• mmu-mir-532: chrX: 7248402-7248497 [-]
• mmu-mir-188: chrX: 7247989-7248056 [-]
• mmu-mir-362: chrX: 7241982-7242046 [-]
• mmu-mir-501: chrX: 7241243-7241351 [-]
• mmu-mir-500: chrX: 7237683-7237774 [-]

Database links

• EntrezGene:Mirn362
• MGI:Mir362
• RNAcentral:URS000075A1D8_10090
• miRBase Tracker:MI0000763

Mature sequence mmu-miR-362-5p

• Accession: MIMAT0000706
• Previous IDs: mmu-miR-362
• Sequence: 5 - aauccuuggaaccuaggugugaau - 28
• Deep sequencing: 25265 reads, 102 experiments
• Evidence: experimental; cloned [1,3], MPSS [2], Illumina [4-5]
• Database links:
  • RNAcentral:URS000027FB0A_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-362-5p
  • miRDB:mmu-miR-362-5p
  • microrna.org:mmu-miR-362-5p

Mature sequence mmu-miR-362-3p

• Accession: MIMAT0004684
• Sequence: 42 - aacacaccuguucaaggauuca - 63
• Deep sequencing: 19721 reads, 103 experiments
• Evidence: experimental; cloned [3], Illumina [4-5]
• Database links:
  • RNAcentral:URS000038A4CD_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-362-3p
  • miRDB:mmu-miR-362-3p
  • microrna.org:mmu-miR-362-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).