Stem-loop sequence hsa-mir-302a

Accession

MI0000738 (change log)

Previous IDs

hsa-mir-302

Symbol

HGNC:MIR302A

Description

Homo sapiens miR-302a stem-loop

Gene family

MIPF0000071; mir-302

Literature search

193 open access papers mention hsa-mir-302a
(1069 sentences)

Stem-loop

      c    u         u           gaa 
5' cca cacu aaacgugga guacuugcuuu   a
   ||| |||| ||||||||| |||||||||||   c
3' ggu gugg uuuguaccu cgugaaugaag   u
      a    u         u           aaa 

Deep sequencing

1572 reads, 42.9 reads per million, 35 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr4: 112648183-112648251 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-302a

• hsa-mir-302b: chr4: 112648485-112648557 [-]
• hsa-mir-302c: chr4: 112648363-112648430 [-]
• hsa-mir-302a: chr4: 112648183-112648251 [-]
• hsa-mir-302d: chr4: 112648004-112648071 [-]
• hsa-mir-367: chr4: 112647874-112647941 [-]

Database links

• EntrezGene:MIR302A
• HGNC:MIR302A
• RNAcentral:URS0000689179_9606
• miRBase Tracker:MI0000738

Mature sequence hsa-miR-302a-5p

• Accession: MIMAT0000683
• Previous IDs: hsa-miR-302a*
• Sequence: 6 - acuuaaacguggauguacuugcu - 28
• Deep sequencing: 857 reads, 13 experiments
• Evidence: experimental; cloned [2,4], Northern [2]
• Database links:
  • RNAcentral:URS000075C59E_9606
• Predicted targets:
  • TargetMiner:hsa-miR-302a-5p
  • TargetScanVert:hsa-miR-302a-5p
  • miRDB:hsa-miR-302a-5p
  • microrna.org:hsa-miR-302a-5p

Mature sequence hsa-miR-302a-3p

• Accession: MIMAT0000684
• Previous IDs: hsa-miR-302a
• Sequence: 44 - uaagugcuuccauguuuugguga - 66
• Deep sequencing: 714 reads, 30 experiments
• Evidence: experimental; cloned [2,4], Northern [2]
• Database links:
  • RNAcentral:URS0000070CD2_9606
• Predicted targets:
  • TargetMiner:hsa-miR-302a-3p
  • TargetScanVert:hsa-miR-302a-3p
  • miRDB:hsa-miR-302a-3p
  • microrna.org:hsa-miR-302a-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:15183728 "Human embryonic stem cells express a unique set of microRNAs" Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS, Moon SY, Kim VN, Kim KS Dev Biol. 270:488-498(2004).
3. PMID:15634332 "New human and mouse microRNA genes found by homology search" Weber MJ FEBS J. 272:59-73(2005).
4. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).