Stem-loop sequence mmu-mir-212

Accession

MI0000696 (change log)

Symbol

MGI:Mir212

Description

Mus musculus miR-212 stem-loop

Gene family

MIPF0000065; mir-132

Literature search

76 open access papers mention mmu-mir-212
(630 sentences)

Stem-loop

       -  c   c   -ca  u     cu      c      ccc  g 
5' gggc ag gcg cgg   cc uggcu  agacug uuacug   gg c
   |||| || ||| |||   || |||||  |||||| ||||||   ||  
3' cccg uc cgc gcc   gg acuga  ucugac aaugac   cc c
       g  -   a   acc  c     cc      -      -uu  g 

Deep sequencing

29436 reads, 57.3 reads per million, 110 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 75173388-75173478 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000013960 ; RP23-143A14.3-001; intron 1

  ENSMUST00000134252 ; 1700016P03Rik-001; intron 1

Clustered miRNAs

< 10kb from mmu-mir-212

• mmu-mir-212: chr11: 75173388-75173478 [+]
• mmu-mir-132: chr11: 75173682-75173747 [+]

Database links

• EntrezGene:Mirn212
• MGI:Mir212
• RNAcentral:URS000075DCDB_10090
• miRBase Tracker:MI0000696

Mature sequence mmu-miR-212-5p

• Accession: MIMAT0017053
• Sequence: 16 - accuuggcucuagacugcuuacu - 38
• Deep sequencing: 17682 reads, 99 experiments
• Evidence: experimental; Illumina [5]
• Database links:
  • RNAcentral:URS00001AFC71_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-212-5p
  • miRDB:mmu-miR-212-5p

Mature sequence mmu-miR-212-3p

• Accession: MIMAT0000659
• Previous IDs: mmu-miR-212
• Sequence: 56 - uaacagucuccagucacggcca - 77
• Deep sequencing: 11753 reads, 99 experiments
• Evidence: experimental; cloned [3], Illumina [4-5]
• Database links:
  • RNAcentral:URS00005D93A0_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-212-3p
  • miRDB:mmu-miR-212-3p
  • microrna.org:mmu-miR-212-3p

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15634332 "New human and mouse microRNA genes found by homology search" Weber MJ FEBS J. 272:59-73(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).