Stem-loop sequence rno-mir-345

Accession

MI0000631 (change log)

Description

Rattus norvegicus miR-345 stem-loop

Gene family

MIPF0000189; mir-345

Literature search

6 open access papers mention rno-mir-345
(24 sentences)

Stem-loop

   --------acc   gu     c  g u          c   u    -      
5'            caa  ccagg cu c gaccccuagu cag gcuu guggu 
              |||  ||||| || | |||||||||| ||| |||| |||| g
3'            guu  ggucc ga g cuggggauca guc cggg caucg 
   ggacaccucua   ug     a  g u          a   c    u      

Deep sequencing

45183 reads, 8.15 reads per million, 491 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 132748968-132749063 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir345
• miRBase Tracker:MI0000631

Mature sequence rno-miR-345-5p

• Accession: MIMAT0000594
• Previous IDs: rno-miR-345
• Sequence: 16 - ugcugaccccuaguccagugc - 36
• Deep sequencing: 21990 reads, 485 experiments
• Evidence: experimental; cloned [1-3], Northern [1], SOLiD [5]
• Predicted targets:
  • TargetScanVert:rno-miR-345-5p
  • miRDB:rno-miR-345-5p
  • microrna.org:rno-miR-345-5p

Mature sequence rno-miR-345-3p

• Accession: MIMAT0004655
• Sequence: 54 - cccugaacuaggggucuggaga - 75
• Deep sequencing: 23160 reads, 482 experiments
• Evidence: experimental; cloned [4], SOLiD [5]
• Predicted targets:
  • TargetScanVert:rno-miR-345-3p
  • miRDB:rno-miR-345-3p
  • microrna.org:rno-miR-345-3p

References

1. PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2. PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
3. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
4. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
5. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).