Stem-loop sequence mmu-mir-208a

Accession

MI0000555 (change log)

Previous IDs

mmu-mir-208

Symbol

MGI:Mir208a

Description

Mus musculus miR-208a stem-loop

Gene family

MIPF0000178; mir-208

Literature search

81 open access papers mention mmu-mir-208a
(357 sentences)

Stem-loop

   u         g  ug       g  c  gg      c  a 
5'  uccuuugac gg  agcuuuu gc cg  uuauac ug c
    ||||||||| ||  ||||||| || ||  |||||| || a
3'  aggagacug uu  ucgaaaa cg gc  aauaug ac c
   g         g  gu       a  a  ag      c  u 

Deep sequencing

1249 reads, 0 reads per million, 32 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr14: 54949060-54949142 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000081857 ; Myh6-201; intron 29

Database links

• EntrezGene:Mirn208a
• MGI:Mir208a
• RNAcentral:URS000075A3B3_10090
• miRBase Tracker:MI0000555

Mature sequence mmu-miR-208a-5p

• Accession: MIMAT0017014
• Sequence: 15 - gagcuuuuggcccggguuauac - 36
• Deep sequencing: 339 reads, 14 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000005FEE9_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-208a-5p
  • miRDB:mmu-miR-208a-5p

Mature sequence mmu-miR-208a-3p

• Accession: MIMAT0000520
• Previous IDs: mmu-miR-208;mmu-miR-208a
• Sequence: 50 - auaagacgagcaaaaagcuugu - 71
• Deep sequencing: 899 reads, 27 experiments
• Evidence: experimental; cloned [1-2], Illumina [3]
• Database links:
  • RNAcentral:URS00000E5433_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-208a-3p
  • miRDB:mmu-miR-208a-3p
  • microrna.org:mmu-miR-208a-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).