Stem-loop sequence mmu-mir-30d

Accession

MI0000549 (change log)

Symbol

MGI:Mir30d

Description

Mus musculus miR-30d stem-loop

Gene family

MIPF0000005; mir-30

Literature search

194 open access papers mention mmu-mir-30d
(1057 sentences)

Stem-loop

   a    u   u u         ccc           guaa  c 
5'  aguc gug c guaaacauc   gacuggaagcu    gc a
    |||| ||| | |||||||||   |||||||||||    ||  
3'  ucgg cau g cguuuguag   cugacuuucga    cg c
   c    u   c u         --a           --ac  a 

Deep sequencing

8626901 reads, 1.05e+04 reads per million, 107 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr15: 68341208-68341289 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000104147 ; RP23-61D6.1-001; exon 3

  ENSMUST00000175699 ; Gm20732-001; exon 3

Clustered miRNAs

< 10kb from mmu-mir-30d

• mmu-mir-30d: chr15: 68341208-68341289 [-]
• mmu-mir-30b: chr15: 68337415-68337510 [-]

Database links

• EntrezGene:Mirn30d
• MGI:Mir30d
• RNAcentral:URS000075B035_10090
• miRBase Tracker:MI0000549

Mature sequence mmu-miR-30d-5p

• Accession: MIMAT0000515
• Previous IDs: mmu-miR-30d
• Sequence: 12 - uguaaacauccccgacuggaag - 33
• Deep sequencing: 8070908 reads, 107 experiments
• Evidence: experimental; cloned [1,3-5], Illumina [6,8]
• Database links:
  • RNAcentral:URS000005CF5F_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-30d-5p
  • miRDB:mmu-miR-30d-5p
  • microrna.org:mmu-miR-30d-5p

Mature sequence mmu-miR-30d-3p

• Accession: MIMAT0017011
• Previous IDs: mmu-miR-30d*
• Sequence: 52 - cuuucagucagauguuugcugc - 73
• Deep sequencing: 555974 reads, 106 experiments
• Evidence: experimental; 454 [7], Illumina [8]
• Database links:
  • RNAcentral:URS00004B2A47_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-30d-3p
  • miRDB:mmu-miR-30d-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:12554860 "Numerous microRNPs in neuronal cells containing novel microRNAs" Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G RNA. 9:180-186(2003).
3. PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
4. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
5. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
6. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
7. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
8. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).