Stem-loop sequence hsa-mir-9-1

Accession

MI0000466 (change log)

Symbol

HGNC:MIR9-1

Description

Homo sapiens miR-9-1 stem-loop

Gene family

MIPF0000014; mir-9

Literature search

547 open access papers mention hsa-mir-9-1
(3315 sentences)

Stem-loop

   c       guug   uc               g      u  ug 
5'  gggguug    uua  uuugguuaucuagcu uaugag gg  u
    |||||||    |||  ||||||||||||||| |||||| ||  g
3'  ccccaau    aau  aagccaauagaucga auacuu cu  g
   a       -aaa   ga               a      -  ga 

Deep sequencing

806436 reads, 1.07e+03 reads per million, 153 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr1: 156420341-156420429 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000080560 ; RP11-98G7.1-001; intron 3

  ENST00000441085 ; RP11-98G7.1-001; intron 3

Database links

• EntrezGene:MIR9-1
• HGNC:MIR9-1
• RNAcentral:URS000075C54E_9606
• miRBase Tracker:MI0000466

Mature sequence hsa-miR-9-5p

• Accession: MIMAT0000441
• Previous IDs: hsa-miR-9
• Sequence: 16 - ucuuugguuaucuagcuguauga - 38
• Deep sequencing: 2152514 reads, 151 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00004208C5_9606
• Predicted targets:
  • TargetMiner:hsa-miR-9-5p
  • TargetScanVert:hsa-miR-9-5p
  • miRDB:hsa-miR-9-5p
  • microrna.org:hsa-miR-9-5p

Mature sequence hsa-miR-9-3p

• Accession: MIMAT0000442
• Previous IDs: hsa-miR-9*
• Sequence: 55 - auaaagcuagauaaccgaaagu - 76
• Deep sequencing: 266091 reads, 137 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00003496BE_9606
• Predicted targets:
  • TargetMiner:hsa-miR-9-3p
  • TargetScanVert:hsa-miR-9-3p
  • miRDB:hsa-miR-9-3p
  • microrna.org:hsa-miR-9-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).