Stem-loop sequence mmu-mir-299a

Accession

MI0000399 (change log)

Previous IDs

mmu-mir-299

Symbol

MGI:Mir299a

Description

Mus musculus miR-299 stem-loop

Gene family

MIPF0000186; mir-299

Literature search

25 open access papers mention mmu-mir-299a
(94 sentences)

Stem-loop

        a                      uu 
5' aagaa ugguuuaccgucccacauacau  u
   ||||| ||||||||||||||||||||||  g
3' uucuu gccaaauggcaggguguaugua  a
        c                      ug 

Deep sequencing

33040 reads, 235 reads per million, 91 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109710638-109710700 [+]
• Overlapping transcripts:

  antisense

  ENSMUST00000175550 ; Gm25400-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-299a

• mmu-mir-379: chr12: 109709060-109709125 [+]
• mmu-mir-411: chr12: 109710175-109710256 [+]
• mmu-mir-299a: chr12: 109710638-109710700 [+]
• mmu-mir-299b: chr12: 109710645-109710693 [-]
• mmu-mir-380: chr12: 109711803-109711863 [+]
• mmu-mir-1197: chr12: 109712317-109712436 [+]
• mmu-mir-323: chr12: 109712508-109712593 [+]
• mmu-mir-758: chr12: 109712810-109712890 [+]
• mmu-mir-329: chr12: 109713481-109713577 [+]
• mmu-mir-494: chr12: 109715318-109715402 [+]
• mmu-mir-679: chr12: 109715577-109715650 [+]
• mmu-mir-1193: chr12: 109715671-109715791 [+]
• mmu-mir-666: chr12: 109717085-109717183 [+]
• mmu-mir-543: chr12: 109717258-109717333 [+]
• mmu-mir-495: chr12: 109718754-109718816 [+]
• mmu-mir-667: chr12: 109720006-109720097 [+]

Database links

• EntrezGene:Mirn299
• MGI:Mir299a
• RNAcentral:URS0000676278_10090
• miRBase Tracker:MI0000399

Mature sequence mmu-miR-299a-5p

• Accession: MIMAT0000377
• Previous IDs: mmu-miR-299;mmu-miR-299*;mmu-miR-299-5p
• Sequence: 7 - ugguuuaccgucccacauacau - 28
• Deep sequencing: 7643 reads, 71 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000017DBB8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-299a-5p
  • miRDB:mmu-miR-299a-5p
  • microrna.org:mmu-miR-299a-5p

Mature sequence mmu-miR-299a-3p

• Accession: MIMAT0004577
• Previous IDs: mmu-miR-299;mmu-miR-299-3p
• Sequence: 39 - uaugugggacgguaaaccgcuu - 60
• Deep sequencing: 25397 reads, 88 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS0000258C1E_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-299a-3p
  • miRDB:mmu-miR-299a-3p
  • microrna.org:mmu-miR-299a-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).