Stem-loop sequence hsa-mir-208a

Accession

MI0000251 (change log)

Previous IDs

hsa-mir-208

Symbol

HGNC:MIR208A

Description

Homo sapiens miR-208a stem-loop

Gene family

MIPF0000178; mir-208

Literature search

114 open access papers mention hsa-mir-208a
(534 sentences)

Stem-loop

   u   g           g  c  gg      c  a 
5'  gac ggcgagcuuuu gc cg  uuauac ug u
    ||| ||||||||||| || ||  |||||| || g
3'  cug uuguucgaaaa cg gc  aauaug ac c
   a   g           a  a  ag      c  u 

Deep sequencing

11207 reads, 90 reads per million, 30 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr14: 23388596-23388666 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000313828 ; AL132780.10-001; exon 1

  ENST00000424245 ; PRMT5-AS1-001; exon 1

Database links

• EntrezGene:MIR208A
• HGNC:MIR208A
• miRBase Tracker:MI0000251

Mature sequence hsa-miR-208a-5p

• Accession: MIMAT0026474
• Sequence: 9 - gagcuuuuggcccggguuauac - 30
• Deep sequencing: 567 reads, 16 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:hsa-miR-208a-5p
  • miRDB:hsa-miR-208a-5p

Mature sequence hsa-miR-208a-3p

• Accession: MIMAT0000241
• Previous IDs: hsa-miR-208
• Sequence: 44 - auaagacgagcaaaaagcuugu - 65
• Deep sequencing: 10637 reads, 29 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:hsa-miR-208a-3p
  • miRDB:hsa-miR-208a-3p
  • microrna.org:hsa-miR-208a-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).