Stem-loop sequence mmu-mir-204

Accession

MI0000247 (change log)

Symbol

MGI:Mir204

Description

Mus musculus miR-204 stem-loop

Gene family

MIPF0000042; mir-204

Literature search

84 open access papers mention mmu-mir-204
(848 sentences)

Stem-loop

   u    u          a     u    gagaau 
5'  ggac ucccuuuguc uccua gccu      a
    |||| |||||||||| ||||| ||||      u
3'  cuug agggaaacgg agggu cgga      a
   a    c          a     -    ggaagu 

Deep sequencing

34557 reads, 69.6 reads per million, 79 experiments

Confidence

Annotation confidence: high

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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 22750605-22750672 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000083573 ; Mir204-201; exon 1

  ENSMUST00000099569 ; Trpm3-206; intron 6

  ENSMUST00000087576 ; Trpm3-203; intron 6

  ENSMUST00000074770 ; Trpm3-202; intron 6

  ENSMUST00000037901 ; Trpm3-201; intron 6

  ENSMUST00000099566 ; Trpm3-205; intron 6

  ENSMUST00000099564 ; Trpm3-204; intron 7

Database links

• EntrezGene:Mirn204
• MGI:Mir204
• RNAcentral:URS000075DAE3_10090
• miRBase Tracker:MI0000247

Mature sequence mmu-miR-204-5p

• Accession: MIMAT0000237
• Previous IDs: mmu-miR-204
• Sequence: 6 - uucccuuugucauccuaugccu - 27
• Deep sequencing: 33017 reads, 72 experiments
• Evidence: experimental; cloned [1-3], Illumina [4-5]
• Database links:
  • RNAcentral:URS000029D9F1_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-204-5p
  • miRDB:mmu-miR-204-5p
  • microrna.org:mmu-miR-204-5p

Mature sequence mmu-miR-204-3p

• Accession: MIMAT0017002
• Previous IDs: mmu-miR-204*
• Sequence: 45 - gcugggaaggcaaagggacgu - 65
• Deep sequencing: 1513 reads, 42 experiments
• Evidence: experimental; Illumina [5]
• Database links:
  • RNAcentral:URS000059A01D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-204-3p
  • miRDB:mmu-miR-204-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).