Stem-loop sequence mmu-mir-201

Accession

MI0000244 (change log)

Symbol

MGI:Mir201

Description

Mus musculus miR-201 stem-loop

Gene family

MIPF0000386; mir-743

Literature search

5 open access papers mention mmu-mir-201
(10 sentences)

Stem-loop

           u   u            uuc   a 
5' uaccuuac cag aaggcauuguuc   uau u
   |||||||| ||| ||||||||||||   |||  
3' augggaug guc uuccgugacaag   aua u
           u   u            uaa   a 

Deep sequencing

4005 reads, 136 reads per million, 44 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 67988096-67988161 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-201

• mmu-mir-547: chrX: 67988374-67988451 [-]
• mmu-mir-201: chrX: 67988096-67988161 [-]

Database links

• EntrezGene:Mirn201
• MGI:Mir201
• RNAcentral:URS000075A62C_10090
• miRBase Tracker:MI0000244

Mature sequence mmu-miR-201-5p

• Accession: MIMAT0000234
• Previous IDs: mmu-miR-201
• Sequence: 6 - uacucaguaaggcauuguucuu - 27
• Deep sequencing: 3836 reads, 42 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000010FA41_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-201-5p
  • miRDB:mmu-miR-201-5p
  • microrna.org:mmu-miR-201-5p

Mature sequence mmu-miR-201-3p

• Accession: MIMAT0017001
• Previous IDs: mmu-miR-201*
• Sequence: 41 - ugaacagugccuuucuguguagg - 63
• Deep sequencing: 167 reads, 23 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS00001E8140_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-201-3p
  • miRDB:mmu-miR-201-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).