Stem-loop sequence mmu-mir-195a

Accession

MI0000237 (change log)

Previous IDs

mmu-mir-195

Symbol

MGI:Mir195a

Description

Mus musculus miR-195 stem-loop

Gene family

MIPF0000006; mir-15

Literature search

100 open access papers mention mmu-mir-195a
(411 sentences)

Stem-loop

   a    ca     -     cucu          -a          u  gga 
5'  cacc  acucu ccugg    agcagcacag  aauauuggca gg   a
    ||||  ||||| |||||    ||||||||||  |||||||||| ||   g
3'  gugg  uggga ggacc    ucgucguguc  uuauaaccgu cu   u
   a    --     c     ----          gg          -  gag 

Deep sequencing

163629 reads, 810 reads per million, 108 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 70235042-70235135 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-195a

• mmu-mir-497b: chr11: 70234692-70234816 [-]
• mmu-mir-497a: chr11: 70234717-70234800 [+]
• mmu-mir-195a: chr11: 70235042-70235135 [+]

Database links

• EntrezGene:Mirn195
• MGI:Mir195a
• RNAcentral:URS000075D9AD_10090
• miRBase Tracker:MI0000237

Mature sequence mmu-miR-195a-5p

• Accession: MIMAT0000225
• Previous IDs: mmu-miR-195;mmu-miR-195-5p
• Sequence: 21 - uagcagcacagaaauauuggc - 41
• Deep sequencing: 161095 reads, 107 experiments
• Evidence: experimental; cloned [1-3], Illumina [4,6]
• Database links:
  • RNAcentral:URS00005B3525_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-195a-5p
  • miRDB:mmu-miR-195a-5p
  • microrna.org:mmu-miR-195a-5p

Mature sequence mmu-miR-195a-3p

• Accession: MIMAT0017000
• Previous IDs: mmu-miR-195*;mmu-miR-195-3p
• Sequence: 59 - ccaauauuggcugugcugcucc - 80
• Deep sequencing: 2436 reads, 55 experiments
• Evidence: experimental; 454 [5], Illumina [6]
• Database links:
  • RNAcentral:URS0000476C64_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-195a-3p
  • miRDB:mmu-miR-195a-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
6. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).