Stem-loop sequence mmu-mir-129-1

Accession

MI0000222 (change log)

Previous IDs

mmu-mir-129b

Symbol

MGI:Mir129-1

Description

Mus musculus miR-129-1 stem-loop

Gene family

MIPF0000073; mir-129

Literature search

52 open access papers mention mmu-mir-129-1
(511 sentences)

Stem-loop

        -       c   cu      g   uu  -  c 
5' uggau cuuuuug ggu  gggcuu cug  cu cu g
   ||||| ||||||| |||  |||||| |||  || ||  
3' aucua gaaaaac cca  cccgaa gac  ga ga a
        u       c   uu      g   -u  u  c 

Deep sequencing

208757 reads, 209 reads per million, 102 experiments

Confidence

Annotation confidence: high

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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [4].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr6: 29022619-29022691 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir129-1
• MGI:Mir129-1
• RNAcentral:URS000075A7B5_10090
• miRBase Tracker:MI0000222

Mature sequence mmu-miR-129-5p

• Accession: MIMAT0000209
• Previous IDs: mmu-miR-129
• Sequence: 6 - cuuuuugcggucugggcuugc - 26
• Deep sequencing: 325625 reads, 97 experiments
• Evidence: experimental; cloned [1,3-4], Illumina [5-6]
• Database links:
  • RNAcentral:URS00004E1410_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-129-5p
  • miRDB:mmu-miR-129-5p
  • microrna.org:mmu-miR-129-5p

Mature sequence mmu-miR-129-1-3p

• Accession: MIMAT0016994
• Sequence: 49 - aagcccuuaccccaaaaaguau - 70
• Deep sequencing: 45758 reads, 96 experiments
• Evidence: experimental; Illumina [6]
• Database links:
  • RNAcentral:URS00004CCDA3_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-129-1-3p
  • miRDB:mmu-miR-129-1-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
3. PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
4. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
5. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
6. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).