miRBase entry: mdo-mir-1544f

Stem-loop mdo-mir-1544f


Accession
MI0040946
Description
Monodelphis domestica mdo-mir-1544f precursor miRNA


Sequence

27369 reads, 478 reads per million, 5 experiments
UGCACUCAGGGAUAGAAUAGCGGuccacuuggcagccuCCUUUUCUAUCCCUGGGACUGG
....(((((((((((((.((.(((((....))..)))..)).))))))))))))).....

Structure
-UGCA             U  -C   --  a 
     CUCAGGGAUAGAA AG  GGu  cc c
     ||||||||||||| ||  |||  ||  
     GGGUCCCUAUCUU UC  ccg  gg u
GGUCA             U  Cu   ac  u 


Annotation confidence Not enough data
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Genome context
chrX: 13921267-13921326 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mdo-mir-1544f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1544f-5p

Accession MIMAT0050384
Description Monodelphis domestica mdo-miR-1544f-5p mature miRNA
Sequence 1 - UGCACUCAGGGAUAGAAUAGCGG - 23
Evidence experimental
Illumina [1]

Mature mdo-miR-1544f-3p

Accession MIMAT0050385
Description Monodelphis domestica mdo-miR-1544f-3p mature miRNA
Sequence 39 - CCUUUUCUAUCCCUGGGACUGG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973