miRBase entry: mdo-mir-12394

Stem-loop mdo-mir-12394


Accession
MI0040931
Description
Monodelphis domestica mdo-mir-12394 precursor miRNA


Sequence

1 reads, 0 reads per million, 1 experiments
UCAAAGGAGCGGUUGAUGAGAUGUuaaauaaccuguugaCUCUCUUCCCUACUCCUUGUUC
...((((((.((..((.((((.(((((........))))))))).)).)).))))))....

Structure
-UCA      C  UU  U    U     aua 
    AAGGAG GG  GA GAGA GUuaa   a
    |||||| ||  || |||| |||||    
    UUCCUC UC  CU CUCU Caguu   c
CUUG      A  -C  U    -     guc 


Annotation confidence Not enough data
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Genome context
chr8: 300337399-300337459 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-12394
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-12394-5p

Accession MIMAT0050356
Description Monodelphis domestica mdo-miR-12394-5p mature miRNA
Sequence 1 - UCAAAGGAGCGGUUGAUGAGAUGU - 24
Evidence experimental
Illumina [1]

Mature mdo-miR-12394-3p

Accession MIMAT0050357
Description Monodelphis domestica mdo-miR-12394-3p mature miRNA
Sequence 40 - CUCUCUUCCCUACUCCUUGUUC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973