miRBase entry: mdo-mir-1388

Stem-loop mdo-mir-1388


Accession
MI0040800
Description
Monodelphis domestica mdo-mir-1388 precursor miRNA


Sequence

367 reads, 1 reads per million, 5 experiments
UGGGCUGACAAACCUGAGAUUGacccugagauucaccaUUCUCAGGUUAGACAGUCCUAG
.((((((.(.(((((((((.((..............)).))))))))).).))))))...

Structure
--U      A A         U  acccug 
   GGGCUG C AACCUGAGA UG      a
   |||||| | ||||||||| ||       
   CCUGAC G UUGGACUCU ac      g
GAU      A A         U  cacuua 


Annotation confidence Not enough data
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Genome context
chr1: 472807065-472807124 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-1388
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1388-5p

Accession MIMAT0050132
Description Monodelphis domestica mdo-miR-1388-5p mature miRNA
Sequence 1 - UGGGCUGACAAACCUGAGAUUG - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-1388-3p

Accession MIMAT0050133
Description Monodelphis domestica mdo-miR-1388-3p mature miRNA
Sequence 39 - UUCUCAGGUUAGACAGUCCUAG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973