Stem-loop sequence gga-mir-122b-1

Accession

MI0040772 (change log)

Description

Gallus gallus miR-122b-1 stem-loop

Literature search

16 open access papers mention gga-mir-122b-1
(83 sentences)

Stem-loop

   --uuu             c     auaga 
5'      agugugauaaugg guuug     u
        ||||||||||||| |||||      
3'      ucacacuguuacc caaac     u
   auacc             a     acagg 

Deep sequencing

5 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrW: 2525199-2525256 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-122b-1

• gga-mir-122-2: chrW: 2525186-2525262 [-]
• gga-mir-122b-1: chrW: 2525199-2525256 [+]

Database links

• miRBase Tracker:MI0040772

Mature sequence gga-miR-122b-5p

• Accession: MIMAT0050092
• Sequence: 1 - uuuagugugauaauggcguuug - 22
• Deep sequencing: 10 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence gga-miR-122b-3p

• Accession: MIMAT0050093
• Sequence: 36 - aaacaccauugucacacucca - 56
• Evidence: experimental; Illumina [1]

References

1. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).