Stem-loop sequence gga-mir-129-1

Accession

MI0040749 (change log)

Description

Gallus gallus miR-129-1 stem-loop

Literature search

3 open access papers mention gga-mir-129-1
(8 sentences)

Stem-loop

   ----       c   cu      g   uacauaa 
5'     cuuuuug ggu  gggcuu cug       c
       ||||||| |||  |||||| |||        
3'     gaaaaac cca  cccgaa ggc       u
   uuac       c   uu      g   ccaucca 

Deep sequencing

293838 reads, 2.84e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr5: 21516911-21516976 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0040749

Mature sequence gga-miR-129-5p

• Accession: MIMAT0050056
• Sequence: 1 - cuuuuugcggucugggcuugc - 21
• Deep sequencing: 832347 reads, 5 experiments
• Evidence: experimental; Illumina [1]

Mature sequence gga-miR-129-1-3p

• Accession: MIMAT0050057
• Sequence: 44 - aagcccuuaccccaaaaagcau - 65
• Deep sequencing: 16376 reads, 5 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).