Stem-loop sequence gga-mir-210b

Accession

MI0040748 (change log)

Description

Gallus gallus miR-210b stem-loop

Literature search

4 open access papers mention gga-mir-210b
(50 sentences)

Stem-loop

   uu        u ac       g  gag  g 
5'   agccgcug c  acgcaca ug   uc c
     |||||||| |  ||||||| ||   || c
3'   ucggugac g  ugcgugu ac   ag g
   ac        u au       a  acg  a 

Deep sequencing

18 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr5: 15887076-15887138 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-210b

• gga-mir-210b: chr5: 15887076-15887138 [-]
• gga-mir-210a: chr5: 15887066-15887152 [+]

Database links

• miRBase Tracker:MI0040748

Mature sequence gga-miR-210b-5p

• Accession: MIMAT0050054
• Sequence: 1 - uuagccgcugucacacgcac - 20
• Evidence: experimental; Illumina [1]

Mature sequence gga-miR-210b-3p

• Accession: MIMAT0050055
• Sequence: 42 - augugcguuagucaguggcuc - 62
• Deep sequencing: 18 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).