Stem-loop sequence gga-mir-9b-1

Accession

MI0040667 (change log)

Description

Gallus gallus miR-9b-1 stem-loop

Literature search

19 open access papers mention gga-mir-9b-1
(326 sentences)

Stem-loop

   -uuc            u     -  gcu 
5'     gguuaucuagcu uauga ug   c
       |||||||||||| ||||| ||   c
3'     ccaauagaucga auacu ac   a
   gaaa            c     c  aac 

Deep sequencing

3794 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr10: 12934137-12934193 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-9b-1

• gga-mir-9-3: chr10: 12934122-12934207 [-]
• gga-mir-9b-1: chr10: 12934137-12934193 [+]

Database links

• miRBase Tracker:MI0040667

Mature sequence gga-miR-9b-5p

• Accession: MIMAT0049903
• Sequence: 1 - uucgguuaucuagcuuuauga - 21
• Deep sequencing: 7398 reads, 5 experiments
• Evidence: experimental; Illumina [1]

Mature sequence gga-miR-9b-3p

• Accession: MIMAT0049904
• Sequence: 38 - auacagcuagauaaccaaag - 57
• Deep sequencing: 122 reads, 3 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).