miRBase entry: cel-mir-58c

Stem-loop cel-mir-58c


Accession
MI0039738
Description
Caenorhabditis elegans cel-mir-58c precursor miRNA

Literature search
19 open access papers mention cel-mir-58c
(216 sentences)

Sequence

183 reads, 8 reads per million, 15 experiments
auauucaauugcaaccuguugguugaucuccuaccaaauaauggauaAGAGAUCAGGCAAUAGGUUCAAAagugaauaa
.((((((.(((.(((((((((.((((((((.(((((.....))).)).)))))))).))))))))))))...)))))).

Structure
a      --a   c         g        c  -   a 
 uauuca   uug aaccuguug uugaucuc ua cca a
 ||||||   ||| ||||||||| |||||||| || ||| u
 auaagu   AAC UUGGAUAAC GACUAGAG au ggu a
a      gaA   -         G        A  a   a 


Annotation confidence Not enough data
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Genome context
chrIV: 6660634-6660712 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-58c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-58c

Accession MIMAT0049030
Description Caenorhabditis elegans cel-miR-58c mature miRNA
Sequence 48 - AGAGAUCAGGCAAUAGGUUCAAA - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28645154
    ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline
    "Brown KC, Svendsen JM, Tucci RM, Montgomery BE, Montgomery TA"
    "Nucleic Acids Res (2017) 45:9093-9107