Stem-loop sequence csi-MIR169p

Accession

MI0039706 (change log)

Description

Citrus sinensis miR169p stem-loop

Literature search

5 open access papers mention csi-MIR169p
(12 sentences)

Stem-loop

   a     -----g   c   g  u  c      cau   u  u  -au  u    caaa     u 
5'  guuug      uag caa ga ga uugccu   cug cc ca   gg cuuu    aaaug u
    |||||      ||| ||| || || ||||||   ||| || ||   || ||||    ||||| g
3'  cagac      auc guu cu cu aacgga   gau gg gu   cc gaaa    uuuac a
   -     aguuua   a   a  -  -      --c   -  u  guu  c    --ua     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr2: 10984178-10984294 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from csi-MIR169p

• csi-MIR169p: chr2: 10984178-10984294 [+]
• csi-MIR169c: chr2: 10985954-10986108 [+]

Database links

• miRBase Tracker:MI0039706

Mature sequence csi-miR169p-5p

• Accession: MIMAT0048996
• Sequence: 8 - uagccaaggaugacuugccu - 27
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).