Stem-loop sequence csi-MIR164d

Accession

MI0039704 (change log)

Description

Citrus sinensis miR164d stem-loop

Literature search

5 open access papers mention csi-MIR164d
(35 sentences)

Stem-loop

   --uauugu  -uauu       u   u  u  c        ca    a        caccacuu    uccu   gg 
5'         uc     gggugag agc cc ug uggagaag  gggc cgugcaaa        uggc    uuc  u
           ||     ||||||| ||| || || ||||||||  |||| ||||||||        ||||    |||  u
3'         ag     uccacuc uug gg ac accucuuc  cucg gcacguuu        accg    aag  u
   cacucucu  uccuu       c   -  u  a        cc    c        ccuaaauc    --uu   ac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr5: 34323478-34323628 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from csi-MIR164d

• csi-MIR164d: chr5: 34323478-34323628 [-]
• csi-MIR164b: chr5: 34323052-34323202 [-]

Database links

• miRBase Tracker:MI0039704

Mature sequence csi-miR164d-5p

• Accession: MIMAT0048993
• Sequence: 31 - uggagaagcagggcacgugca - 51
• Evidence: experimental; Illumina [1]

Mature sequence csi-miR164d-3p

• Accession: MIMAT0048994
• Sequence: 101 - cacgcgcuccccuucuccaac - 121
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).