miRBase entry: csi-MIR482g

Stem-loop csi-MIR482g


Accession
MI0039700
Description
Citrus sinensis csi-MIR482g precursor miRNA

Literature search
4 open access papers mention csi-MIR482g
(6 sentences)

Sequence

aggaaguuuugggAGUGGGAGCGUGGGGUAAGAAGugaagaaaacguauaauuuuucuuuucuuuuucaauugagaaagaaaauuacaaauucaauuUCUUCCCUAUGCCUCCCAUUCCuaugauuucc
.(((((((.(((((((((((((((((((.(((((((((((((((........)))))(((((((((((....))))))))))).......))).)))))))))))))).)))))))))))).)))))))

Structure
a       u            -       U       -   gaaaacguauaauuuuuc           a 
 ggaaguu ugggAGUGGGAG CGUGGGG AAGAAGu gaa                  uuuucuuuuuc a
 ||||||| |||||||||||| ||||||| ||||||| |||                  |||||||||||  
 ccuuuag auCCUUACCCUC GUAUCCC UUCUuua cuu                  aaaagaaagag u
-       u            C       -       a   -----------aaacauu           u 


Annotation confidence Not enough data
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Genome context
chr2: 9942925-9943053 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from csi-MIR482g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR482g-5p

Accession MIMAT0048987
Description Citrus sinensis csi-miR482g-5p mature miRNA
Sequence 14 - AGUGGGAGCGUGGGGUAAGAAG - 35
Evidence experimental
Illumina [1]

Mature csi-miR482g-3p

Accession MIMAT0048988
Description Citrus sinensis csi-miR482g-3p mature miRNA
Sequence 98 - UCUUCCCUAUGCCUCCCAUUCC - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113