Stem-loop csi-MIR168

Accession

MI0039699

Description

Citrus sinensis csi-MIR168 precursor miRNA

Literature search

2 open access papers mention csi-MIR168
(5 sentences)

Sequence

guuaccggcggucucuaauUCGCUUGGUGCAGGUCGGGAAcugauuggcuaguuuuuuuuuugaaauuuuuugacagcgagguggcguguuguaauuggucguaacguuuaaauuaaugauugaaaaaaugcgaauuggauCCCGCCUUGCAUCAACUGAAUcggagaccgagguga
.(((((..((((((((.(((((.((((((((((.(((((.((((((.((..((((((((..............((((((.(....).))))))....((((((.............)))))))))))))))).)))))).))))).)))))))))).))))).)))))))).)))))

Structure

g     gg        a     C          U     A      g  ua        ---------------uuugaaauuuuuug      a g 
 uuacc  cggucucu auUCG UUGGUGCAGG CGGGA cugauu gc  guuuuuuu                             acagcg g u
 |||||  |||||||| ||||| |||||||||| ||||| |||||| ||  ||||||||                             |||||| |  
 agugg  gccagagg UAAGU AACUACGUUC GCCCu gguuaa cg  uaaaaaag                             uguugu c g
-     -a        c     C          C     a      g  --        uuaguaauuaaauuugcaaugcugguuaa      g g 

Annotation confidence Not enough data

Genome context

JH999176.1: 244098-244274 [+]

Mature csi-miR168-5p

• Accession: MIMAT0048985
• Description: Citrus sinensis csi-miR168-5p mature miRNA
• Sequence: 20 - UCGCUUGGUGCAGGUCGGGAA - 40
• Evidence: experimental ; Illumina [1]

Mature csi-miR168-3p

• Accession: MIMAT0048986
• Description: Citrus sinensis csi-miR168-3p mature miRNA
• Sequence: 142 - CCCGCCUUGCAUCAACUGAAU - 162
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113