miRBase entry: csi-MIR482e

Stem-loop csi-MIR482e


Accession
MI0039692
Description
Citrus sinensis csi-MIR482e precursor miRNA

Literature search
4 open access papers mention csi-MIR482e
(6 sentences)

Sequence

ggaaagggcugaggcccguaagacauuuucGGUCAUGGGAGGAUUGGCGAaaaaaucuuucaauuuuaccauaaaguauauaagaugacgaugaugauuaaaugaaaucuuUUGCCAACUCCUCCCAUGCCGAugauuucuuaugguuucaauucuuuccaau
((((((((.(((((((.((((((.(((.((((.(((((((((((((((((((..(((((...((((((...))))))....))))).........((((......))))))))))))).)))))))))))))).))).))))))))))))).))))))))...

Structure
---        c       c      c   u    U          -         ---------------------aa     -uca      c 
   ggaaaggg ugaggcc guaaga auu ucGG CAUGGGAGGA UUGGCGAaa                       aucuu    auuuua  
   |||||||| ||||||| |||||| ||| |||| |||||||||| |||||||||                       |||||    |||||| c
   ccuuucuu acuuugg uauucu uag AGCC GUACCCUCCU AACCGUUuu                       uagaa    ugaaau  
uaa        a       -      u   u    -          C         cuaaaguaaauuaguaguagcag     uaua      a 


Annotation confidence Not enough data
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Genome context
chr2: 9926991-9927153 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from csi-MIR482e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR482e-5p

Accession MIMAT0048973
Description Citrus sinensis csi-miR482e-5p mature miRNA
Sequence 31 - GGUCAUGGGAGGAUUGGCGA - 50
Evidence experimental
Illumina [1]

Mature csi-miR482e-3p

Accession MIMAT0048974
Description Citrus sinensis csi-miR482e-3p mature miRNA
Sequence 112 - UUGCCAACUCCUCCCAUGCCGA - 133
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113