Stem-loop csi-MIR536

Accession

MI0039688

Description

Citrus sinensis csi-MIR536 precursor miRNA

Sequence

gugaaguuaugauaagaguaaggauugaggCGCACCCCAGCGUGGAACCAUCaaaaguugugauuacaguuagagcaaugggugaUGGUGCCACGCUGUGUGCGUCuugaaugcuuauucuuugcgcuagacaagc
((..(((...(..(((((((((.((((((((((((..((((((((.(((((((...(((((..(((....))).)))))...))))))).)))))))).))))))))).))).)))))))))..))))..))....

Structure

----  ga   uau au         g   -         CC        A       aaa     ga   c 
    gu  agu   g  aagaguaag auu gaggCGCAC  CAGCGUGG ACCAUCa   guugu  uua a
    ||  |||   |  ||||||||| ||| |||||||||  |||||||| |||||||   |||||  |||  
    ca  ucg   c  uucuuauuc uaa uuCUGCGUG  GUCGCACC UGGUagu   uaacg  gau g
cgaa  ga   --- gu         g   g         -U        G       ggg     -a   u 

Annotation confidence Not enough data

Genome context

chr7: 1201524-1201659 [-]

Mature csi-miR536-5p

• Accession: MIMAT0048967
• Description: Citrus sinensis csi-miR536-5p mature miRNA
• Sequence: 31 - CGCACCCCAGCGUGGAACCAUC - 52
• Evidence: experimental ; Illumina [1]

Mature csi-miR536-3p

• Accession: MIMAT0048968
• Description: Citrus sinensis csi-miR536-3p mature miRNA
• Sequence: 86 - UGGUGCCACGCUGUGUGCGUC - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113