Stem-loop sequence csi-MIR1515b

AccessionMI0039684 (change log)
DescriptionCitrus sinensis miR1515b stem-loop
Literature search

1 open access papers mention csi-MIR1515b
(1 sentences)

Stem-loop 
   -      ug -------              c        c  auuug    c   cu   cuuucuuuuuaauuuacaaauauucauguuua 
5'  ucgauu  c       aucauuuuugcgug aaugaucc ga     cucu uua  caa                                u
    ||||||  |       |||||||||||||| |||||||| ||     |||| |||  |||                                 
3'  gguuga  g       uaguaaaaacgcac uuacuagg cu     gggg aau  guu                                u
   c      gu cucaguu              -        u  ----a    c   -u   uuuaaucuuaaaaaaaaagauaaaaaguuugg
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Csi_valencia_1.0; GCA_000317415.1) Overlapping transcripts
chr1: 22746989-22747162 [+]
intergenic
Clustered miRNAs
< 10kb from csi-MIR1515b
csi-MIR1515achr1: 22741515-22741688 [+]
csi-MIR1515bchr1: 22746989-22747162 [+]
Database links

Mature sequence csi-miR1515b-5p

Accession MIMAT0048959
Sequence

11 -  

ucauuuuugcgugcaaugaucc

 - 32

Get sequence
Evidence experimental; Illumina [1]

Mature sequence csi-miR1515b-3p

Accession MIMAT0048960
Sequence

138 -  

aucauucacgcaaaaaugauu

 - 158

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).