miRBase entry: csi-MIR1515b

Stem-loop csi-MIR1515b


Accession
MI0039684
Description
Citrus sinensis csi-MIR1515b precursor miRNA

Literature search
1 open access papers mention csi-MIR1515b
(1 sentences)

Sequence

ucgauuugcaUCAUUUUUGCGUGCAAUGAUCCcgaauuugcucucuuacucaacuuucuuuuuaauuuacaaauauucauguuuauugguuugaaaaauagaaaaaaaaauucuaauuuuuguuaacggggaucuggAUCAUUCACGCAAAAAUGAUUugacucgugaguuggc
.((((((((((((((((((((((.((((((((.((......(((((....(((.((((...(((((..(((........)))..)))))...))))..(((((.......)))))....))).....))))))).)))))))))))))))))))))).......))))))))..

Structure
-u        -------              C        c  auuugc     -uacu   ----------------------c    uuu     uu   aau 
  cgauuugc       aUCAUUUUUGCGUG AAUGAUCC ga      ucucu     caa                       uuuc   uuaau  aca   a
  ||||||||       |||||||||||||| |||||||| ||      |||||     |||                       ||||   |||||  |||    
  guugagug       UAGUAAAAACGCAC UUACUAgg cu      agggg     guu                       aaag   gguua  ugu   u
cg        cucaguU              -        u  ------     caauu   uuuaaucuuaaaaaaaaagauaa    uuu     uu   acu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 22746989-22747162 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from csi-MIR1515b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR1515b-5p

Accession MIMAT0048959
Description Citrus sinensis csi-miR1515b-5p mature miRNA
Sequence 11 - UCAUUUUUGCGUGCAAUGAUCC - 32
Evidence experimental
Illumina [1]

Mature csi-miR1515b-3p

Accession MIMAT0048960
Description Citrus sinensis csi-miR1515b-3p mature miRNA
Sequence 138 - AUCAUUCACGCAAAAAUGAUU - 158
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113