miRBase entry: csi-MIR535c

Stem-loop csi-MIR535c


Accession
MI0039676
Description
Citrus sinensis csi-MIR535c precursor miRNA

Literature search
2 open access papers mention csi-MIR535c
(5 sentences)

Sequence

auccuugcccagacucgagacaacuuuguuUGACAAUGAGAGAGAGCACACccgucagcauucgugcaaauggcaaggcugucuacuagcGUGCUCUCUACCAUUGUCAUAcgauuugcuuaacgcaguugaauauucucu
................(((((((((((((.((((((((..(((((((((.(..((((((.....(((.....)))..))))...))..).)))))))))..)))))))).))))...((.....))))))).....)))).

Structure
auccuugcccagacuc    -----     ------------    u        AG         A cc  ---    auucg   a 
                gaga     caacu            uugu UGACAAUG  AGAGAGCAC C  gu   cagc     ugc a
                ||||     |||||            |||| ||||||||  ||||||||| |  ||   ||||     ||| a
                cucu     guuga            agcA ACUGUUAC  UCUCUCGUG g  ca   gucg     acg u
---------------u    uauaa     cgcaauucguuu    U        CA         c au  ucu    ---ga   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 14868303-14868443 [-]

Database links

Mature csi-miR535c-5p

Accession MIMAT0048947
Description Citrus sinensis csi-miR535c-5p mature miRNA
Sequence 31 - UGACAAUGAGAGAGAGCACAC - 51
Evidence experimental
Illumina [1]

Mature csi-miR535c-3p

Accession MIMAT0048948
Description Citrus sinensis csi-miR535c-3p mature miRNA
Sequence 91 - GUGCUCUCUACCAUUGUCAUA - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113