miRBase entry: csi-MIR535b

Stem-loop csi-MIR535b


Accession
MI0039675
Description
Citrus sinensis csi-MIR535b precursor miRNA

Literature search
2 open access papers mention csi-MIR535b
(5 sentences)

Sequence

auccuugcccagacucaauacaaauuugcuUGACAAUGAGAGAGAGCACACcugucagcauucgugcaaauggcaaggcugucuacuagcGUGCUCUCUACCAUUGUCAUAaaauuugcuuaaagcaguugaauauugucu
....................(((((((...((((((((..(((((((((.(..((((((.....(((.....)))..))))...))..).)))))))))..))))))))..)))))))......(((((.....)))))..

Structure
---auccuugcccagacucaaua       gcu        AG         A cu  ---    auucg   a 
                       caaauuu   UGACAAUG  AGAGAGCAC C  gu   cagc     ugc a
                       |||||||   ||||||||  ||||||||| |  ||   ||||     ||| a
                       guuuaaa   ACUGUUAC  UCUCUCGUG g  ca   gucg     acg u
ucuguuauaaguugacgaaauuc       -AU        CA         c au  ucu    ---ga   g 


Annotation confidence Not enough data
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Genome context
chr2: 14795671-14795811 [-]

Database links

Mature csi-miR535b-5p

Accession MIMAT0048945
Description Citrus sinensis csi-miR535b-5p mature miRNA
Sequence 31 - UGACAAUGAGAGAGAGCACAC - 51
Evidence experimental
Illumina [1]

Mature csi-miR535b-3p

Accession MIMAT0048946
Description Citrus sinensis csi-miR535b-3p mature miRNA
Sequence 91 - GUGCUCUCUACCAUUGUCAUA - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113