miRBase entry: csi-MIR477e

Stem-loop csi-MIR477e


Accession
MI0039673
Description
Citrus sinensis csi-MIR477e precursor miRNA

Literature search
1 open access papers mention csi-MIR477e
(3 sentences)

Sequence

auugcucACUCUCCCUCAAGGGCUUCUGAacuggccuuguucaccuucaauuaaaggccuagacUGAGGUUCUUGGGGAGAGUAGauaauguu
((((((.((((((((.((((((((((......((((((...............))))))......)))))))))))))))))))).))))...

Structure
---    -  c        U          UGAacu      guucac 
   auug cu ACUCUCCC CAAGGGCUUC      ggccuu      c
   |||| || |||||||| ||||||||||      ||||||      u
   uaau GA UGAGAGGG GUUCUUGGAG      ccggaa      u
uug    a  -        -          Ucagau      auuaac 


Annotation confidence Not enough data
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Genome context
chr5: 1063882-1063974 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from csi-MIR477e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR477e-5p

Accession MIMAT0048941
Description Citrus sinensis csi-miR477e-5p mature miRNA
Sequence 8 - ACUCUCCCUCAAGGGCUUCUGA - 29
Evidence experimental
Illumina [1]

Mature csi-miR477e-3p

Accession MIMAT0048942
Description Citrus sinensis csi-miR477e-3p mature miRNA
Sequence 65 - UGAGGUUCUUGGGGAGAGUAG - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113