Stem-loop sequence csi-MIR477d

Accession

MI0039672 (change log)

Description

Citrus sinensis miR477d stem-loop

Literature search

2 open access papers mention csi-MIR477d
(11 sentences)

Stem-loop

   ---   cu         u   g      u   guuaauuaaugacaauuauu 
5'    uug  cacucuccc caa ggcuuc ggc                    a
      |||  ||||||||| ||| |||||| |||                     
3'    aac  gugagaggg guu ccggag ccg                    a
   gaa   ag         -   g      u   gaccguccgucgacguucgu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr5: 1064087-1064188 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from csi-MIR477d

• csi-MIR477d: chr5: 1064087-1064188 [-]
• csi-MIR477e: chr5: 1063882-1063974 [-]

Database links

• miRBase Tracker:MI0039672

Mature sequence csi-miR477d-5p

• Accession: MIMAT0048939
• Sequence: 7 - acucucccucaagggcuucugg - 28
• Evidence: experimental; Illumina [1]

Mature sequence csi-miR477d-3p

• Accession: MIMAT0048940
• Sequence: 75 - ugaggccguuggggagagugg - 95
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).