miRBase entry: csi-MIR396e

Stem-loop csi-MIR396e


Accession
MI0039666
Description
Citrus sinensis csi-MIR396e precursor miRNA

Literature search
1 open access papers mention csi-MIR396e
(2 sentences)

Sequence

ggaaauuaauuaaaggucuuuugcaugcuuUUCCACGGCUUUCUUGAACUuaauuaguacgguuaauuuuuuugugcuauuaacaagcaauuaauaugcaaaucuuuaaucagugcaaaGCUCAAGAAUGCCGUGGGAAAacaugaaagguuuuugucgugccaccaccc
((........((((((.(((((.((((.(((((((((((.(((((((.(((.....((((((((((....((((((.((((((.......))))))))))))...)))))).)))).))).))))))).))))))))))).)))))))))))))))........))....

Structure
----  aaauuaau      u     g    c           U       A   aauua    -      uuuu      c      ca 
    gg        uaaagg cuuuu caug uuUUCCACGGC UUCUUGA CUu     guac gguuaa    uuugug uauuaa  a
    ||        |||||| ||||| |||| ||||||||||| ||||||| |||     |||| ||||||    |||||| ||||||  g
    cc        guuuuu ggaaa guac AAAGGGUGCCG AAGAACU Gaa     cgug cuaauu    aaacgu auaauu  c
ccca  accgugcu      -     -    a           U       C   ----a    a      -ucu      -      aa 


Annotation confidence Not enough data
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Genome context
chr7: 10780729-10780898 [-]

Database links

Mature csi-miR396e-5p

Accession MIMAT0048928
Description Citrus sinensis csi-miR396e-5p mature miRNA
Sequence 31 - UUCCACGGCUUUCUUGAACU - 50
Evidence experimental
Illumina [1]

Mature csi-miR396e-3p

Accession MIMAT0048929
Description Citrus sinensis csi-miR396e-3p mature miRNA
Sequence 120 - GCUCAAGAAUGCCGUGGGAAA - 140
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113