Stem-loop sequence csi-MIR393c

Accession

MI0039661 (change log)

Description

Citrus sinensis miR393c stem-loop

Literature search

2 open access papers mention csi-MIR393c
(9 sentences)

Stem-loop

   ----    ucuugcuucu  a  ua     ua             c    u      ---a   c    u   aa 
5'     gguu          gc ac  gagga  aauccaaagggau gcau gauccu    agc uuaa uau  u
       ||||          || ||  |||||  ||||||||||||| |||| ||||||    ||| |||| |||  u
3'     cuaa          cg ug  uuccu  uuagguuucccua cgua cuagga    uug aauu aua  c
   aucu    --uauauacu  a  gc     cc             u    -      guac   u    c   cu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr7: 31959511-31959653 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039661

Mature sequence csi-miR393c-5p

• Accession: MIMAT0048921
• Sequence: 31 - uccaaagggaucgcauugauc - 51
• Evidence: experimental; Illumina [1]

Mature sequence csi-miR393c-3p

• Accession: MIMAT0048922
• Sequence: 93 - aucaugcuaucccuuuggauu - 113
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).