Stem-loop sequence csi-MIR172d

Accession

MI0039658 (change log)

Description

Citrus sinensis miR172d stem-loop

Literature search

5 open access papers mention csi-MIR172d
(15 sentences)

Stem-loop

   --aagagcuagcugcug c         ggu                   a  agcuuuagcaagggaauucauugaau 
5'                  c aauauuugc   ugcggcaucaucaagauuc ca                          a
                    | |||||||||   ||||||||||||||||||| ||                          g
3'                  g uuauaaacg   acgucguaguaguucuaag gu                          g
   caccauacuuagcauca u         acu                   g  aauaaaccuuccuugaaaacuuaucc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr8: 21300353-21300511 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039658

Mature sequence csi-miR172d-5p

• Accession: MIMAT0048917
• Sequence: 31 - gcggcaucaucaagauucaca - 51
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).