miRBase entry: csi-MIR171i

Stem-loop csi-MIR171i


Accession
MI0039656
Description
Citrus sinensis csi-MIR171i precursor miRNA

Literature search
3 open access papers mention csi-MIR171i
(3 sentences)

Sequence

aaagcauacgagauauuggugcgguucaaucugagagcagugcucaaagacuaagaagagcccuguuauuUGAUUGAGCCGUGCCAAUAUCacgucacgugca
...(((((((.((((((((((((((((((((....(((((.((((............)))).)))))....)))))))))))))))))))).)))...)))).

Structure
aaa    ---   a                    ugag     u    aaaga 
   gcau   acg gauauuggugcgguucaauc    agcag gcuc     c
   ||||   ||| ||||||||||||||||||||    ||||| ||||      
   cgug   ugc CUAUAACCGUGCCGAGUUAG    uuguc cgag     u
--a    cac   a                    Uuua     c    aagaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 1312646-1312748 [+]

Database links

Mature csi-miR171i-3p

Accession MIMAT0048914
Description Citrus sinensis csi-miR171i-3p mature miRNA
Sequence 71 - UGAUUGAGCCGUGCCAAUAUC - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113