Stem-loop csi-MIR171f

Accession

MI0039653

Description

Citrus sinensis csi-MIR171f precursor miRNA

Literature search

3 open access papers mention csi-MIR171f
(3 sentences)

Sequence

guguguauauauaugaaaggguagccgugaUAUUGGCCUGGUUCACUCAGAcaaaccgguuuauuugcuuuuauuagagcaaaguuccagguuuuuuuguuuugguuUGAUUGAGCCGUGCCAAUAUCucguuucucuuucauuuuuccaagacucac
(((.((......(((((((((.(((.(.(((((((((.(((((((.(((((((((((((....((((((((....))))))))...)).)))))..........)))))).))))))).))))))))).)))).))))))))).........)).)))

Structure

   u  ---auauau         u   c u         C       C      ----------     -  uuua        u 
gug gu         augaaaggg agc g gaUAUUGGC UGGUUCA UCAGAc          aaacc gg    uuugcuuu a
||| ||         ||||||||| ||| | ||||||||| ||||||| ||||||          ||||| ||    ||||||||  
cac ca         uacuuucuc uug c CUAUAACCG GCCGAGU AGUuug          uuugg cc    aaacgaga u
   u  gaaccuuuu         u   - u         U       U      guuuuguuuu     a  -uug        u 

Annotation confidence Not enough data

Genome context

chr1: 28277765-28277922 [+]

Mature csi-miR171f-5p

• Accession: MIMAT0048910
• Description: Citrus sinensis csi-miR171f-5p mature miRNA
• Sequence: 31 - UAUUGGCCUGGUUCACUCAGA - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR171f-3p

• Accession: MIMAT0048911
• Description: Citrus sinensis csi-miR171f-3p mature miRNA
• Sequence: 108 - UGAUUGAGCCGUGCCAAUAUC - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113