Stem-loop csi-MIR171d

Accession

MI0039651

Description

Citrus sinensis csi-MIR171d precursor miRNA

Literature search

3 open access papers mention csi-MIR171d
(3 sentences)

Sequence

agagcugcaauacugaaauagucacugcgauauuggcccgguucauucagagcuuaagcguuuaagcugaaugcuugcugguggacuuUGAUUGAGCCGUGCCAAUAUCuuagugcuuacuucaaacaccaugcagccc
...((((((....((((.(((.(((((.(((((((((.(((((((.((((((((((((((((((...)))))))))).....)).)))))).))))))).))))))))).))))).))).)))).......))))))..

Structure

aga      ---auac    a   u     c         c       u      -  -----          a 
   gcugca       ugaa uag cacug gauauuggc cgguuca ucagag cu     uaagcguuua  
   ||||||       |||| ||| ||||| ||||||||| ||||||| |||||| ||     |||||||||| g
   cgacgu       acuu auu gugau CUAUAACCG GCCGAGU AGUuuc gg     guucguaagu  
-cc      accacaa    c   c     u         U       U      a  ugguc          c 

Annotation confidence Not enough data

Genome context

chr3: 27933094-27933232 [-]

Mature csi-miR171d-3p

• Accession: MIMAT0048908
• Description: Citrus sinensis csi-miR171d-3p mature miRNA
• Sequence: 89 - UGAUUGAGCCGUGCCAAUAUC - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113