Stem-loop sequence csi-MIR169f

Accession

MI0039641 (change log)

Description

Citrus sinensis miR169f stem-loop

Literature search

5 open access papers mention csi-MIR169f
(12 sentences)

Stem-loop

   -agc   a      --ga    a   u   -u                        cuuuuaaagaaaggucucucaacuuuagcuua 
5'     cua caugaa    aaga ccu guu  gauagccaaggaugacuugccuug                                g
       ||| ||||||    |||| ||| |||  ||||||||||||||||||||||||                                 
3'     gau guacuu    uucu gga cag  uuaucgguuucugcugaacggaac                                c
   uuca   c      auua    c   -   uu                        cuuggacguguuccuaugaucgauauauacau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr6: 14255727-14255899 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0039641

Mature sequence csi-miR169f-5p

• Accession: MIMAT0048895
• Sequence: 31 - uagccaaggaugacuugccu - 50
• Evidence: experimental; Illumina [1]

References

1. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).