miRBase entry: csi-MIR169f

Stem-loop csi-MIR169f


Accession
MI0039641
Description
Citrus sinensis csi-MIR169f precursor miRNA

Literature search
5 open access papers mention csi-MIR169f
(12 sentences)

Sequence

agccuaacaugaagaaagaaccuuguuugaUAGCCAAGGAUGACUUGCCUugcuuuuaaagaaaggucucucaacuuuagcuuagcuacauauauagcuaguauccuugugcagguuccaaggcaagucgucuuuggcuauuuugacaggcucuuauuauucaugcuagacuu
...(((.((((((..((((.(((.(((.((((((((((((((((((((((((..........((((.............(((.(((((......))))))))..))))..........))))))))))))))))))))))))..)))))).))))....)))))).)))....

Structure
-agc   a      --ga    a   u   -u                        cuuuuaaaga    ucucucaacuuua   u     ca 
    cua caugaa    aaga ccu guu  gaUAGCCAAGGAUGACUUGCCUug          aagg             gcu agcua  u
    ||| ||||||    |||| ||| |||  ||||||||||||||||||||||||          ||||             ||| |||||   
    gau guacuu    uucu gga cag  uuaucgguuucugcugaacggaac          uucc             uga ucgau  a
uuca   c      auua    c   -   uu                        cuuggacgug    -----------ua   -     au 


Annotation confidence Not enough data
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Genome context
chr6: 14255727-14255899 [-]

Database links

Mature csi-miR169f-5p

Accession MIMAT0048895
Description Citrus sinensis csi-miR169f-5p mature miRNA
Sequence 31 - UAGCCAAGGAUGACUUGCCU - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113